Algorithms in computational molecular biology : techniques, approaches and applications / edited by Mourad Elloumi, Albert Y. Zomaya.

Includes bibliographical references and index.

String data structures for computational molecular biology / Christos Makris and Evangelos Theodoridis -- Efficient restricted-case algorithms for problems in computational biology / Patricia A. Evans and H. Todd Wareham -- Finite automation in pattern machining / Jan Holub -- New developments in processing of degenerate sequences / Pavlos Antoniou and Costas S. Iliopoulos -- Exact search algorithms for biological sequences / Eric Rivals, Leena Salmela, and Jorma Tarhio -- Algorithmic aspects of arc-annotated sequences / Guillaume Blin, Maxime Crochemore, and St�ephane Vialette -- Algorithmic issues in DNA barcoding problems / Bhaskar DasGupta, Ming-Yang Kao, and Ion M�andoiu -- Recent advances in weighted DNA sequences / Manolis Christodoulakis and Costas S. Iliopoulos -- DNA computing for subgraph isomorphism problem and related problems / Sun-Yuan Hsieh, Chao-Wen Huang, and Hsin-Hung Chou -- Graphs in bioinformatics / Elsa Chacko and Shoba Ranganathan -- A flexible data store for managing bioinformatics data / Bassam A. Alqaralleh [and others] -- Algorithms for the alignment of biological sequences / Ahmed Mokaddem and Mourad Elloumi -- Algorithms for local structural alignment and structural motif identification / Sanguthevar Rajasekaran, Vamsi Kundeti, and Martin Schiller -- Evolution of the clustal family of multiple sequence alignment programs / Mohamed Radhouene Aniba and Julie Thompson -- Filters and seeds approaches for fast homology searches in large datasets / Nadia Pisanti, Mathieu Giraud, and Pierre Peterlongo -- Novel combinatorial and information- theoretic alignment-free distances for biological data mining / Chiara Epifanio [and others] -- In silico methods for the analysis of metabolites and drug molecules / Varun Khanna and Shoba Ranganathan -- Motif finding algorithms in biological sequences / Tarek El Falah, Mourad Elloumi, and Thierry Lecroq -- Computational characterization of regulatory regions / Enrique Blanco -- Algorithmic issues in the analysis of chip-SEQ data / Federico Zambelli and Giulio Paves -- Approaches and methods for operon prediction based on machine learning techniques / Yan Wang [and others] -- Protein function prediction with data-mining techniques / Xing-Ming Zhao and Luonan Chen -- Protein domain boundary prediction / Paul D. Yoo, Bing Bing Zhou, and Albert Y. Zomaya -- An introduction to RNA structure and pseudo knot prediction / Jana Sperschneider and Amitava Datta -- Phylogenetic search algorithms for maximum likelihood / Alexandros Stamatakis -- Heuristic methods for phylogenetic reconstruction with maximum parsimony -- Adrien Go�effon, Jean-Michel Richer, and Jin-Kao Hao -- Maximum entropy method for composition vector method / Raymond H.-F. Chan, Roger W. Wang, and Jeff C.-F. Wong -- Microarray gene expression data analysis / Alan Wee-Chung Liew and Xiangchao Gan -- Biclustering of microarray data / Wassim Ayadi and Mourad Elloumi -- Computational models for condition-specific gene and pathway inference / Yu-Qing Qiu [and others] -- Heterogeneity of differential expression in cancer studies : algorithms and methods / Radha Krishna Murthy Karuturi -- Comparative genomics : algorithms and applications / Xiao Yang and Srinivas Aluru -- Advances in genome rearrangement algorithms / Masud Hasan and M. Sohel Rahman -- Computing genomic distances : an algorithmic viewpoint / Guillaume Fertin and Irena Rusu -- Wavelet algorithms for DNA analysis / Carlo Cattani -- Haplotype inference models and algorithms / Ling-Yun Wu -- Untangling biological networks using bioinformatics / Gaurav Kumar, Adrian P. Cootes, and Shoba Ranganathan -- Probablistic approaches for investigating biological networks / J�er�emie Bourdon and Damien Eveillard -- Modeling and analysis of biological networks with model checking / Dragan Bo�sna�cki [and others] -- Reverse engineering of molecular networks from a common combinatorial approach / Bhaskar DasGupta, Paola Vera-Licona, and Eduardo Sontag -- Unsupervised learning for gene regulation network inference from expression data : a review / Mohamed Elati and C�eline Rouveirol -- Approaches to construction and analysis of microRNA-mediated networks / Ilana Lichtenstein [and others]

Available to OhioLINK libraries.

This book represents the most comprehensive and up-to-date collection of information on the topic of computational molecular biology. Bringing the most recent research into the forefront of discussion, Algorithms in Computational Molecular Biology studies the most important and useful algorithms currently being used in the field, and provides related problems. It also succeeds where other titles have failed, in offering a wide range of information from the introductory fundamentals right up to the latest, most advanced levels of study.

Copyright � John Wiley & Sons 2011.